Publications of Stefan Janecek: 2006-2010

		Stefan.Janecek@savba.sk phone: ++ 421 2 5930 7420 fax: ++ 421 2 5930 7416		Institute of Molecular Biology Slovak Academy of Sciences Dubravska cesta 21 SK-84551 Bratislava Slovakia


PUBLICATIONS OF STEFAN JANECEK - 2011-2015

1.	Janecek, S., Kuchtova, A. & Petrovicova, S. (2015) A novel GH13 subfamily of α-amylases with a pair of tryptophans in the helix α3 of the catalytic TIM-barrel, the LPDlx signature in the conserved sequence region V and a conserved aromatic motif at the C-terminus. Biologia 70: 1284-1294.		DeGruyter		doi: 10.1515/biolog-2015-0165
2.	Kuchtova, A. & Janecek, S. (2015) In silico analysis of family GH77 with focus on amylomaltases from borreliae and disproportionating enzymes DPE2 from plants and bacteria. Biochimica et Biophysica Acta 1854: 1260-1268.		PubMed		doi: 10.1016/j.bbapap.2015.05.009
3.	Gabrisko, M. & Janecek, S. (2015) Novel family GH3 β-glucosidases or β-xylosidases of unknown function found in various animal groups, including birds and reptiles. Carbohydrate Research 408: 44-50.		PubMed		doi: 10.1016/j.carres.2015.02.004
4.	Majzlova, K. & Janecek, S. (2014) Two structurally related starch-binding domain families CBM25 and CBM26. Biologia 69: 1087-1096.		SpringerLink		doi: 10.2478/s11756-014-0415-3
5.	Ranjani, V., Janecek, S., Chai, K.P., Shahir, S., Noor, R., Abdul Rahman, Z.R., Chan, K.G. & Goh, K.M. (2014) Protein engineering of selected residues from conserved sequence regions of a novel Anoxybacillus α-amylase. Scientific Reports 4: 5850.		PubMed		doi: 10.1038/srep05850
6.	Janecek, S., Svensson, B. & MacGregor, E.A. (2014) α-Amylase - an enzyme specificity found in various families of glycoside hydrolases. Cellular and Molecular Life Sciences 71: 1149-1170.		PubMed		doi:10.1007/s00018-013-1388-z
7.	Blesak, K. & Janecek, S. (2013) Two potentially novel amylolytic enzyme specificities in the prokaryotic glycoside hydrolase α-amylase family GH57. Microbiology 159: 2584-2593.		PubMed		doi:10.1099/mic.0.071084-0
8.	Da Lage, J.L., Binder, M., Hua-Van, A., Janecek, S. & Casane, D. (2013) Gene make-up: rapid and massive intron gains after horizontal transfer of a bacterial α-amylase gene to Basidiomycetes. BMC Evolutionary Biology 13: 40.		PubMed		doi:10.1186/1471-2148-13-40
9.	Majzlova, K., Pukajova, Z. & Janecek, S. (2013) Tracing the evolution of the α-amylase subfamily GH13_36 covering the amylolytic enzymes intermediate between oligo-1,6-glucosidases and neopullulanases. Carbohydrate Research 367: 48-57.		PubMed		doi:10.1016/j.carres.2012.11.022
10.	Puspasari, F., Radjasa, O., Noer, A., Nurachman, Z., Syah, Y., van der Maarel, M., Dijkhuizen, L., Janecek, S. & Natalia, D. (2013) Raw starch degrading α-amylase from Bacillus aquimaris MKSC 6.2: isolation and expression of the gene, bioinformatics and biochemical characterization of the recombinant enzyme. Journal of Applied Microbiology 114: 108-120.		PubMed		doi:10.1111/jam.12025
11.	Flores-Ramirez, G., Janecek, S., Miernyk J.A. & Skultety, L. (2012) In silico biosynthesis of virenose, a methylated deoxy-sugar unique to Coxiella burnetii lipopolysaccharide. Proteome Science 10: Art. No. 67.		PubMed		doi:10.1186/1477-5956-10-67
12.	Janecek, S. & Kuchtova, A. (2012) In silico identification of catalytic residues and domain fold of the family GH119 sharing the catalytic machinery with the α-amylase family GH57. FEBS Letters 586: 3360-3366.		PubMed		doi:10.1016/j.febslet.2012.07.020
13.	Blesak, K. & Janecek, S. (2012) Sequence fingerprints of enzyme specificities from the glycoside hydrolase family GH57. Extremophiles 16: 497-506.		PubMed		doi:10.1007/s00792-012-0449-9
14.	Jung, T.Y., Li, D., Park, J.T., Yoon, S.M., Tran, P.L., Oh, B.H., Janecek, S., Park S.G., Woo, E.J. & Park, K.H. (2012) Association of a novel domain in the active site of archaic hyperthermophile maltogenic amylase from Staphylothermus marinus. Journal of Biological Chemistry 287: 7979-7989.		PubMed		doi:10.1074/jbc.M111.304774
15.	Janecek, S., Svensson, B. & MacGregor, E.A. (2011) Structural and evolutionary aspects of two families of non-catalytic domains present in starch and glycogen binding proteins from microbes, plants and animals. Enzyme and Microbial Technology 49: 429-440.		PubMed		doi: 10.1016/j.enzmictec.2011.07.002
16.	Janecek, S. & Blesak, K. (2011) Sequence-structural features and evolutionary relationships of family GH57 α-amylases and their putative α-amylase-like homologues. Protein Journal 30: 429-435.		PubMed		doi: 10.1007/s10930-011-9348-7
17.	Gabrisko, M. & Janecek, S. (2011) Characterization of maltase clusters in the genus Drosophila. Journal of Molecular Evolution 72: 104-118.		PubMed		doi: 10.1007/s00239-010-9406-3

Kuchtova, A. & Janecek, S. (2015) In silico analysis of family GH77 with focus on amylomaltases from borreliae and disproportionating enzymes DPE2 from plants and bacteria. Biochimica et Biophysica Acta 1854: 1260-1268.

Da Lage, J.L., Binder, M., Hua-Van, A., Janecek, S. & Casane, D. (2013) Gene make-up: rapid and massive intron gains after horizontal transfer of a bacterial α-amylase gene to Basidiomycetes. BMC Evolutionary Biology 13: 40.

Blesak, K. & Janecek, S. (2012) Sequence fingerprints of enzyme specificities from the glycoside hydrolase family GH57. Extremophiles 16: 497-506.

Jung, T.Y., Li, D., Park, J.T., Yoon, S.M., Tran, P.L., Oh, B.H., Janecek, S., Park S.G., Woo, E.J. & Park, K.H. (2012) Association of a novel domain in the active site of archaic hyperthermophile maltogenic amylase from Staphylothermus marinus. Journal of Biological Chemistry 287: 7979-7989.